Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.248827	AI316784	expressed sequence AI316784	11		103672
Mm.248827	Canx	calnexin	11	11 30.0 cM	12330
Gene Ontology	calcium ion binding | calcium ion storage activity | endoplasmic reticulum | extracellular space | integral to membrane | integral to membrane | protein folding | sugar binding
Human Homolog	CANX[calnexin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 207 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TAACAGTTGT (2) 31 0.031 P8 Cb GC TGTGTGAGGT (6) 13.1 0.0131 P8 Cb GC AAGCAACTAA (4) 3.3 0.0033 P8 Cb GC GACATTTTAC (5) 3.3 0.0033 P8 Cb GC AAAAACAAAA (12) 1.6 0.0016 P8 Cb GC AGGAAAACAG (5) 1.6 0.0016 P8 Cb GC CTGTGTGTCA (3) 1.6 0.0016 P8 Cb GC GGTAGAACTG (5) 1.6 0.0016 P8 Cb GC TGGAATGCAG (2) 1.6 0.0016 P8 Cb GC TGTCTGTCCT (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AAAAACAAAA (12) 37 0.037 Cb medulloblastoma TAACAGTTGT (2) 32.4 0.0324 Cb medulloblastoma AGGAAAACAG (5) 2.3 0.0023 Cb medulloblastoma CAGATCTGAA (3) 2.3 0.0023 Cb medulloblastoma CTGTGTGTCA (3) 2.3 0.0023 Cb medulloblastoma GGTAGAACTG (5) 2.3 0.0023 Cb medulloblastoma TGTCTGTCCT (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGTGTGAGGT (6) 35.4 0.0354 P8 GC+1d culture TAACAGTTGT (2) 19.4 0.0194 P8 GC+1d culture AAAAACAAAA (12) 8 0.008 P8 GC+1d culture AACAAATGAA (2) 6.8 0.0068 P8 GC+1d culture AAGCAACTAA (4) 5.7 0.0057 P8 GC+1d culture TGGAATGCAG (2) 5.7 0.0057 P8 GC+1d culture CAGATCTGAA (3) 4.6 0.0046 P8 GC+1d culture TGTCTGTCCT (5) 4.6 0.0046 P8 GC+1d culture TTTCTTCTTT (11) 3.4 0.0034 P8 GC+1d culture TTTTTTTCCC (7) 3.4 0.0034 P8 GC+1d culture GACATTTTAC (5) 2.3 0.0023 P8 GC+1d culture GGTAGAACTG (5) 2.3 0.0023 P8 GC+1d culture ACTCCTCCCT (5) 1.1 0.0011 P8 GC+1d culture AGGAAAACAG (5) 1.1 0.0011 P8 GC+1d culture CCAGTAGTAC (2) 1.1 0.0011 P8 GC+1d culture CTGTGTGTCA (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TAACAGTTGT (2) 38.6 0.0386 P8 GC+SHH+1d culture TGTGTGAGGT (6) 31.6 0.0316 P8 GC+SHH+1d culture AAAAACAAAA (12) 14.1 0.0141 P8 GC+SHH+1d culture AACAAATGAA (2) 7 0.007 P8 GC+SHH+1d culture TGGAATGCAG (2) 5.9 0.0059 P8 GC+SHH+1d culture AAGCAACTAA (4) 3.5 0.0035 P8 GC+SHH+1d culture ACTCCTCCCT (5) 3.5 0.0035 P8 GC+SHH+1d culture TGTCTGTCCT (5) 3.5 0.0035 P8 GC+SHH+1d culture AAAAAACAAA (15) 2.3 0.0023 P8 GC+SHH+1d culture CAGATCTGAA (3) 2.3 0.0023 P8 GC+SHH+1d culture CCAGTAGTAC (2) 2.3 0.0023 P8 GC+SHH+1d culture CTGTGTGTCA (3) 2.3 0.0023 P8 GC+SHH+1d culture GACATTTTAC (5) 2.3 0.0023 P8 GC+SHH+1d culture TTTCTTCTTT (11) 2.3 0.0023 P8 GC+SHH+1d culture AGGAAAACAG (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTCTTTTTT (8) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TAACAGTTGT (2) 28 0.028 3T3 fibroblasts TGGAATGCAG (2) 10.5 0.0105 3T3 fibroblasts AAGCAACTAA (4) 7 0.007 3T3 fibroblasts CTGTGTGTCA (3) 3.5 0.0035 3T3 fibroblasts GGTAGAACTG (5) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TGTGTGAGGT (6) 29.7 0.0297 E15 cortex AAAAACAAAA (12) 4.9 0.0049 E15 cortex CAGATCTGAA (3) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TGTGTGAGGT (6) 13.6 0.0136 P1 cortex TAACAGTTGT (2) 9.1 0.0091 P1 cortex AAAAACAAAA (12) 4.5 0.0045 P1 cortex AACAAATGAA (2) 4.5 0.0045 P1 cortex CAGATCTGAA (3) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TAACAGTTGT (2) 19.9 0.0199 Hypothalamus AAGCAACTAA (4) 9.1 0.0091 Hypothalamus AAAAACAAAA (12) 3.6 0.0036 Hypothalamus AACAAATGAA (2) 1.8 0.0018 Hypothalamus ACTCCTCCCT (5) 1.8 0.0018 Hypothalamus CAGATCTGAA (3) 1.8 0.0018 Hypothalamus TGTGTGAGGT (6) 1.8 0.0018 Hypothalamus TTTCTTCTTT (11) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TAACAGTTGT (2) 56.3 0.0563 E12.5 retina AAAAACAAAA (12) 13.1 0.0131 E12.5 retina AACAAATGAA (2) 11.3 0.0113 E12.5 retina AAGCAACTAA (4) 7.5 0.0075 E12.5 retina TGTCTGTCCT (5) 5.6 0.0056 E12.5 retina GACATTTTAC (5) 3.8 0.0038 E12.5 retina TGTGTGAGGT (6) 3.8 0.0038 E12.5 retina CAGATCTGAA (3) 1.9 0.0019 E12.5 retina TGGAATGCAG (2) 1.9 0.0019 E12.5 retina TTTCTTCTTT (11) 1.9 0.0019 E12.5 retina TTTTTTTCCC (7) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TAACAGTTGT (2) 14.6 0.0146 E14.5 retina AAAAACAAAA (12) 5.5 0.0055 E14.5 retina AACAAATGAA (2) 3.6 0.0036 E14.5 retina GGTAGAACTG (5) 3.6 0.0036 E14.5 retina CTGTGTGTCA (3) 1.8 0.0018 E14.5 retina GACATTTTAC (5) 1.8 0.0018 E14.5 retina TGTCTGTCCT (5) 1.8 0.0018 E14.5 retina TGTGTGAGGT (6) 1.8 0.0018 E14.5 retina TTTTTTTCCC (7) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TAACAGTTGT (2) 19.9 0.0199 E16.5 retina TGTGTGAGGT (6) 10.9 0.0109 E16.5 retina TGGAATGCAG (2) 7.2 0.0072 E16.5 retina GACATTTTAC (5) 1.8 0.0018 E16.5 retina TGTCTGTCCT (5) 1.8 0.0018 E16.5 retina TTTCTTCTTT (11) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TAACAGTTGT (2) 41.8 0.0418 E18.5 retina AAGCAACTAA (4) 7.3 0.0073 E18.5 retina TGTGTGAGGT (6) 5.5 0.0055 E18.5 retina AAAAACAAAA (12) 3.6 0.0036 E18.5 retina CAGATCTGAA (3) 3.6 0.0036 E18.5 retina TTTTTTTCCC (7) 3.6 0.0036 E18.5 retina AAAAAACAAA (15) 1.8 0.0018 E18.5 retina AACAAATGAA (2) 1.8 0.0018 E18.5 retina ACTCCTCCCT (5) 1.8 0.0018 E18.5 retina TGTCTGTCCT (5) 1.8 0.0018 E18.5 retina TTTCTTTTTT (8) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TAACAGTTGT (2) 23.6 0.0236 P0.5 retina TGGAATGCAG (2) 9.8 0.0098 P0.5 retina TGTGTGAGGT (6) 9.8 0.0098 P0.5 retina AACAAATGAA (2) 3.9 0.0039 P0.5 retina AAGCAACTAA (4) 3.9 0.0039 P0.5 retina ACTCCTCCCT (5) 3.9 0.0039 P0.5 retina AAAAACAAAA (12) 2 0.002 P0.5 retina AGGAAAACAG (5) 2 0.002 P0.5 retina CCAGTAGTAC (2) 2 0.002 P0.5 retina TTTTTTTCCC (7) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TAACAGTTGT (2) 31.7 0.0317 P2.5 retina AAGCAACTAA (4) 8.8 0.0088 P2.5 retina GGTAGAACTG (5) 5.3 0.0053 P2.5 retina AAAAACAAAA (12) 3.5 0.0035 P2.5 retina CAGATCTGAA (3) 3.5 0.0035 P2.5 retina TGGAATGCAG (2) 3.5 0.0035 P2.5 retina AACAAATGAA (2) 1.8 0.0018 P2.5 retina AGGAAAACAG (5) 1.8 0.0018 P2.5 retina CTAAGAGGCC (2) 1.8 0.0018 P2.5 retina GACATTTTAC (5) 1.8 0.0018 P2.5 retina GGCCTGGGGG (7) 1.8 0.0018 P2.5 retina TGTGTGAGGT (6) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TAACAGTTGT (2) 29.7 0.0297 P4.5 retina TGTGTGAGGT (6) 5.9 0.0059 P4.5 retina AAAAACAAAA (12) 4 0.004 P4.5 retina AACAAATGAA (2) 4 0.004 P4.5 retina AAGCAACTAA (4) 4 0.004 P4.5 retina AGGAAAACAG (5) 4 0.004 P4.5 retina GGTAGAACTG (5) 4 0.004 P4.5 retina TGGAATGCAG (2) 4 0.004 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GGTAGAACTG (5) 21.7 0.0217 P6.5 retina TAACAGTTGT (2) 16.7 0.0167 P6.5 retina ACTCCTCCCT (5) 5 0.005 P6.5 retina TGTGTGAGGT (6) 5 0.005 P6.5 retina AAGCAACTAA (4) 3.3 0.0033 P6.5 retina TTTTTTTCCC (7) 3.3 0.0033 P6.5 retina AAAAAACAAA (15) 1.7 0.0017 P6.5 retina CAGATCTGAA (3) 1.7 0.0017 P6.5 retina CTAAGAGGCC (2) 1.7 0.0017 P6.5 retina GGCCTGGGGG (7) 1.7 0.0017 P6.5 retina TGGAATGCAG (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TAACAGTTGT (2) 44.6 0.0446 P10.5 crx- retina TGGAATGCAG (2) 16.7 0.0167 P10.5 crx- retina GGTAGAACTG (5) 5.6 0.0056 P10.5 crx- retina ACTCCTCCCT (5) 3.7 0.0037 P10.5 crx- retina CCAGTAGTAC (2) 3.7 0.0037 P10.5 crx- retina TTTTTTTCCC (7) 3.7 0.0037 P10.5 crx- retina AAAAACAAAA (12) 1.9 0.0019 P10.5 crx- retina AACAAATGAA (2) 1.9 0.0019 P10.5 crx- retina CAGATCTGAA (3) 1.9 0.0019 P10.5 crx- retina TGTCTGTCCT (5) 1.9 0.0019 P10.5 crx- retina TGTGTGAGGT (6) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TAACAGTTGT (2) 32.7 0.0327 P10.5 crx+ retina GGTAGAACTG (5) 15.4 0.0154 P10.5 crx+ retina AAGCAACTAA (4) 7.7 0.0077 P10.5 crx+ retina TGTCTGTCCT (5) 3.8 0.0038 P10.5 crx+ retina ACTCCTCCCT (5) 1.9 0.0019 P10.5 crx+ retina CTGTGTGTCA (3) 1.9 0.0019 P10.5 crx+ retina TTTTTTTCCC (7) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TAACAGTTGT (2) 16.7 0.0167 Adult retinal TGGAATGCAG (2) 7.4 0.0074 Adult retinal GGTAGAACTG (5) 5.6 0.0056 Adult retinal ACTCCTCCCT (5) 3.7 0.0037 Adult retinal GACATTTTAC (5) 3.7 0.0037 Adult retinal AAAAACAAAA (12) 1.9 0.0019 Adult retinal CAGATCTGAA (3) 1.9 0.0019 Adult retinal GGCCTGGGGG (7) 1.9 0.0019 Adult retinal TGTCTGTCCT (5) 1.9 0.0019 Adult retinal TGTGTGAGGT (6) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GGTAGAACTG (5) 15.3 0.0153 ONL TAACAGTTGT (2) 15.3 0.0153 ONL AACAAATGAA (2) 7.7 0.0077 ONL AAGCAACTAA (4) 7.7 0.0077 ONL AAAAACAAAA (12) 3.8 0.0038 ONL TGTCTGTCCT (5) 3.8 0.0038 ONL TTTTTTTCCC (7) 3.8 0.0038 ONL AAAAAACAAA (15) 1.9 0.0019 ONL ACTCCTCCCT (5) 1.9 0.0019 ONL AGGAAAACAG (5) 1.9 0.0019 ONL CAGATCTGAA (3) 1.9 0.0019