Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271986	5330414D10Rik	RIKEN cDNA 5330414D10 gene	2	2 H4	245867
Gene Ontology	protein modification | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | S-adenosylmethionine-dependent methyltransferase activity
Human Homolog	C20orf36[chromosome 20 open reading frame 36]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

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SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GAACTTTAAG (6) 3.3 0.0033 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GAACTTAAAG (2) 11.6 0.0116 Cb medulloblastoma GAACTTTAAG (6) 4.6 0.0046 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture CAGACTATAA (3) 4.6 0.0046 P8 GC+1d culture GAACTTTAAG (6) 4.6 0.0046 P8 GC+1d culture GAACTTAAAG (2) 3.4 0.0034 P8 GC+1d culture TGACTCACCA (2) 3.4 0.0034 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GAACTTAAAG (2) 5.9 0.0059 P8 GC+SHH+1d culture TGACTCACCA (2) 2.3 0.0023 P8 GC+SHH+1d culture ATGTCTGCTC (3) 1.2 0.0012 P8 GC+SHH+1d culture CAGACTATAA (3) 1.2 0.0012 P8 GC+SHH+1d culture CTCTAACTTG (2) 1.2 0.0012 P8 GC+SHH+1d culture GAACTTTAAG (6) 1.2 0.0012 P8 GC+SHH+1d culture GGCGGCGCTG (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts TGACTCACCA (2) 7 0.007 3T3 fibroblasts CTCTAACTTG (2) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex ACTTTAAATA (4) 4.5 0.0045 P1 cortex GAACTTTAAG (6) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GAACTTAAAG (2) 7.2 0.0072 Hypothalamus GAACTTTAAG (6) 3.6 0.0036 Hypothalamus GGCGGCGCTG (3) 3.6 0.0036 Hypothalamus ATGTCTGCTC (3) 1.8 0.0018 Hypothalamus TGTTTAAAAA (13) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GAACTTAAAG (2) 5.6 0.0056 E12.5 retina TGACTCACCA (2) 5.6 0.0056 E12.5 retina CTCTAACTTG (2) 1.9 0.0019 E12.5 retina TGTTAAAAAA (4) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GAACTTAAAG (2) 5.5 0.0055 E14.5 retina GAACTTTAAG (6) 5.5 0.0055 E14.5 retina ATGTCTGCTC (3) 3.6 0.0036 E14.5 retina CTCTAACTTG (2) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CAGACTATAA (3) 1.8 0.0018 E16.5 retina GAACTTAAAG (2) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GAACTTAAAG (2) 3.6 0.0036 E18.5 retina GAACTTTAAG (6) 1.8 0.0018 E18.5 retina GGCGGCGCTG (3) 1.8 0.0018 E18.5 retina TGTTAAAAAA (4) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GAACTTAAAG (2) 3.9 0.0039 P0.5 retina ATGTCTGCTC (3) 2 0.002 P0.5 retina CTCTAACTTG (2) 2 0.002 P0.5 retina GAACTTTAAG (6) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GAACTTAAAG (2) 14.1 0.0141 P2.5 retina GAACTTTAAG (6) 3.5 0.0035 P2.5 retina CAGACTATAA (3) 1.8 0.0018 P2.5 retina CTCTAACTTG (2) 1.8 0.0018 P2.5 retina GGCGGCGCTG (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GAACTTAAAG (2) 19.8 0.0198 P4.5 retina CAGACTATAA (3) 11.9 0.0119 P4.5 retina GAACTTTAAG (6) 7.9 0.0079 P4.5 retina TGTTTAAAAA (13) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GAACTTAAAG (2) 20 0.02 P6.5 retina CAGACTATAA (3) 8.3 0.0083 P6.5 retina TGTTTAAAAA (13) 5 0.005 P6.5 retina CTCTAACTTG (2) 3.3 0.0033 P6.5 retina ACTTTAAATA (4) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GAACTTAAAG (2) 18.6 0.0186 P10.5 crx- retina CTCTAACTTG (2) 9.3 0.0093 P10.5 crx- retina GAACTTTAAG (6) 7.4 0.0074 P10.5 crx- retina TGACTCACCA (2) 5.6 0.0056 P10.5 crx- retina CAGACTATAA (3) 3.7 0.0037 P10.5 crx- retina ACTTTAAATA (4) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GAACTTAAAG (2) 13.5 0.0135 P10.5 crx+ retina CAGACTATAA (3) 7.7 0.0077 P10.5 crx+ retina AGAATTTTCG 3.8 0.0038 P10.5 crx+ retina GAACTTTAAG (6) 3.8 0.0038 P10.5 crx+ retina CTCTAACTTG (2) 1.9 0.0019 P10.5 crx+ retina TGACTCACCA (2) 1.9 0.0019 P10.5 crx+ retina TGTTAAAAAA (4) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GAACTTAAAG (2) 29.6 0.0296 Adult retinal CTCTAACTTG (2) 9.3 0.0093 Adult retinal CAGACTATAA (3) 3.7 0.0037 Adult retinal TGACTCACCA (2) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GAACTTAAAG (2) 47.9 0.0479 ONL CTCTAACTTG (2) 5.7 0.0057 ONL TGACTCACCA (2) 3.8 0.0038 ONL ACTTTAAATA (4) 1.9 0.0019 ONL AGAATTTTCG 1.9 0.0019 ONL CAGACTATAA (3) 1.9 0.0019 ONL GAACTTTAAG (6) 1.9 0.0019