Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.273379	Snx5	sorting nexin 5	2	2 80.0 cM	69178
Gene Ontology	intracellular signaling cascade | protein transport | transport
Human Homolog	SNX5[sorting nexin 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 128 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC GCGACGCGGG (6) 9.8 0.0098 P8 Cb GC TGAATAAATA 3.3 0.0033 P8 Cb GC TTACCAAAAA 3.3 0.0033 P8 Cb GC TCTGTCTGAA (7) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma TCTGTCTGAA (7) 4.6 0.0046 Cb medulloblastoma ACAGTGCCTA (2) 2.3 0.0023 Cb medulloblastoma GCGACGCGGG (6) 2.3 0.0023 Cb medulloblastoma GCTGTCGGGT (2) 2.3 0.0023 Cb medulloblastoma TGTGTTTGTG (12) 2.3 0.0023 Cb medulloblastoma TTACCAAAAA 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture TGTGTTTGTG (12) 5.7 0.0057 P8 GC+1d culture ACAGTGCCTA (2) 4.6 0.0046 P8 GC+1d culture GCGACGCGGG (6) 2.3 0.0023 P8 GC+1d culture TGAATAAATA 2.3 0.0023 P8 GC+1d culture CTTTATTCCA (4) 1.1 0.0011 P8 GC+1d culture GCTGTCGGGT (2) 1.1 0.0011 P8 GC+1d culture TTACCATATG 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture GCGACGCGGG (6) 15.2 0.0152 P8 GC+SHH+1d culture TCTGTCTGAA (7) 2.3 0.0023 P8 GC+SHH+1d culture TGAATAAATA 2.3 0.0023 P8 GC+SHH+1d culture TGTGTTTGTG (12) 2.3 0.0023 P8 GC+SHH+1d culture CTTTATTCCA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCTGTCGGGT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTACCAAAAA 1.2 0.0012 3T3 fibroblasts CTTTATTCCA (4) 42.1 0.0421 3T3 fibroblasts GCGACGCGGG (6) 7 0.007 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex TCTGTCTGAA (7) 9.9 0.0099 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex ACAGTGCCTA (2) 13.6 0.0136 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex GCGACGCGGG (6) 9.1 0.0091 P1 cortex TGTGTTTGTG (12) 9.1 0.0091 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus GCGACGCGGG (6) 16.3 0.0163 Hypothalamus TCTGTCTGAA (7) 3.6 0.0036 Hypothalamus AAGTCTTTCT (5) 1.8 0.0018 Hypothalamus ACAGTGCCTA (2) 1.8 0.0018 Hypothalamus TGAATAAATA 1.8 0.0018 Hypothalamus TTACCAAAAA 1.8 0.0018 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina GCGACGCGGG (6) 7.5 0.0075 E12.5 retina TCTGTCTGAA (7) 3.8 0.0038 E12.5 retina AAGTCTTTCT (5) 1.9 0.0019 E12.5 retina TGCTGGGATT (12) 1.9 0.0019 E12.5 retina TGTGTTTGTG (12) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina GCGACGCGGG (6) 5.5 0.0055 E14.5 retina AAGCTTTCTC (6) 1.8 0.0018 E14.5 retina GCTGTCGGGT (2) 1.8 0.0018 E14.5 retina TCTGTCTGAA (7) 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina GCGACGCGGG (6) 3.6 0.0036 E16.5 retina TGTGTTTGTG (12) 3.6 0.0036 E16.5 retina GCTGTCGGGT (2) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina GCGACGCGGG (6) 16.4 0.0164 E18.5 retina TGCTGGGATT (12) 7.3 0.0073 E18.5 retina TGAATAAATA 5.5 0.0055 E18.5 retina ACAGTGCCTA (2) 3.6 0.0036 E18.5 retina AAGTCTTTCT (5) 1.8 0.0018 E18.5 retina TCTGTCTGAA (7) 1.8 0.0018 E18.5 retina TTACCAAAAA 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina GCGACGCGGG (6) 11.8 0.0118 P0.5 retina TGTGTTTGTG (12) 7.9 0.0079 P0.5 retina TCTGTCTGAA (7) 3.9 0.0039 P0.5 retina TGAATAAATA 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina GCGACGCGGG (6) 7 0.007 P2.5 retina TGAATAAATA 3.5 0.0035 P2.5 retina TGTGTTTGTG (12) 3.5 0.0035 P2.5 retina ACAGTGCCTA (2) 1.8 0.0018 P2.5 retina CTTTATTCCA (4) 1.8 0.0018 P2.5 retina TGCTGGGATT (12) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina GCGACGCGGG (6) 15.9 0.0159 P4.5 retina TGAATAAATA 4 0.004 P4.5 retina GCTGTCGGGT (2) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina GCGACGCGGG (6) 8.3 0.0083 P6.5 retina TGTGTTTGTG (12) 8.3 0.0083 P6.5 retina TGAATAAATA 5 0.005 P6.5 retina TGCTGGGATT (12) 1.7 0.0017 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina TGTGTTTGTG (12) 3.7 0.0037 P10.5 crx- retina AAGCTTTCTC (6) 1.9 0.0019 P10.5 crx- retina GCGACGCGGG (6) 1.9 0.0019 P10.5 crx- retina GCTGTCGGGT (2) 1.9 0.0019 P10.5 crx- retina TTACCATATG 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina GCGACGCGGG (6) 7.7 0.0077 P10.5 crx+ retina TGTGTTTGTG (12) 5.8 0.0058 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina AAGCTTTCTC (6) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal TGCTGGGATT (12) 3.7 0.0037 Adult retinal GCGACGCGGG (6) 1.9 0.0019 Adult retinal TGTGTTTGTG (12) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL GCGACGCGGG (6) 5.7 0.0057 ONL TGCTGGGATT (12) 3.8 0.0038 ONL AAGTCTTTCT (5) 1.9 0.0019 ONL TCTGTCTGAA (7) 1.9 0.0019 ONL TGTGTTTGTG (12) 1.9 0.0019 ONL TTACCAAAAA 1.9 0.0019