Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.305152	Apoe	apolipoprotein E	7	7 4.0 cM	11816
Gene Ontology	extracellular | extracellular space | heparin binding | lipid binding | lipid transport | lipid transporter activity | lipoprotein metabolism
Human Homolog	APOE[apolipoprotein E] | APOE[apolipoprotein E]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 294 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGGGCCAGA (3) 34.3 0.0343 P8 Cb GC GCCTCTGGTG (11) 24.5 0.0245 P8 Cb GC CATCGCCAGT (3) 22.8 0.0228 P8 Cb GC GAAGGAACAA (5) 9.8 0.0098 P8 Cb GC CTGGGCCCAG (8) 8.2 0.0082 P8 Cb GC GAGGATCTAC (4) 6.5 0.0065 P8 Cb GC GAGGAGGGTG (5) 4.9 0.0049 P8 Cb GC CTGGCAGAGC (3) 3.3 0.0033 P8 Cb GC CTGGGCCAGA (9) 3.3 0.0033 P8 Cb GC GAGGAGGTGC (4) 3.3 0.0033 P8 Cb GC TATCGCCAGT 3.3 0.0033 P8 Cb GC TGCTCACGCA 3.3 0.0033 P8 Cb GC CTAGGCGCTG (3) 1.6 0.0016 P8 Cb GC CTGGGGAAGA (7) 1.6 0.0016 P8 Cb GC GAGGAAGTGC (4) 1.6 0.0016 P8 Cb GC GAGGAGGTGG (13) 1.6 0.0016 P8 Cb GC GGAGGGAGGG (4) 1.6 0.0016 P8 Cb GC GGGAGATGCT (3) 1.6 0.0016 P8 Cb GC GGGGAGGGGC (5) 1.6 0.0016 Cb medulloblastoma TTGGGCCAGA (3) 53.2 0.0532 Cb medulloblastoma CATCGCCAGT (3) 50.9 0.0509 Cb medulloblastoma GCCTCTGGTG (11) 16.2 0.0162 Cb medulloblastoma GAAGGAACAA (5) 11.6 0.0116 Cb medulloblastoma CTGGGCCCAG (8) 9.2 0.0092 Cb medulloblastoma GAGGATCTAC (4) 6.9 0.0069 Cb medulloblastoma GAGGAGGTGC (4) 4.6 0.0046 Cb medulloblastoma GTGTGACATT (2) 4.6 0.0046 Cb medulloblastoma CCTGGGCAGA (7) 2.3 0.0023 Cb medulloblastoma GAGGAAGTGC (4) 2.3 0.0023 Cb medulloblastoma GAGGAGGGTG (5) 2.3 0.0023 Cb medulloblastoma GCCAGAGCAC (7) 2.3 0.0023 Cb medulloblastoma GGGAGATGCT (3) 2.3 0.0023 P8 GC+1d culture GCCTCTGGTG (11) 22.8 0.0228 P8 GC+1d culture TTGGGCCAGA (3) 21.7 0.0217 P8 GC+1d culture CTGGGCCCAG (8) 19.4 0.0194 P8 GC+1d culture CATCGCCAGT (3) 17.1 0.0171 P8 GC+1d culture GAGGAGGGTG (5) 3.4 0.0034 P8 GC+1d culture AGGGAAAGAT (3) 2.3 0.0023 P8 GC+1d culture CTGGGCCAGG (7) 2.3 0.0023 P8 GC+1d culture GAAGGAAGTG (5) 2.3 0.0023 P8 GC+1d culture GGGGAGGGGC (5) 2.3 0.0023 P8 GC+1d culture CTAGGCGCTG (3) 1.1 0.0011 P8 GC+1d culture CTGGCAGAGC (3) 1.1 0.0011 P8 GC+1d culture CTGGGCAGAC (3) 1.1 0.0011 P8 GC+1d culture CTGGGCCAGA (9) 1.1 0.0011 P8 GC+1d culture GAAGGAACAA (5) 1.1 0.0011 P8 GC+1d culture GAGGAAGTGC (4) 1.1 0.0011 P8 GC+1d culture GAGGAGGGGA (12) 1.1 0.0011 P8 GC+1d culture GAGGAGGTGC (4) 1.1 0.0011 P8 GC+1d culture GCCAGAGCAC (7) 1.1 0.0011 P8 GC+1d culture TCGGCTCCGA 1.1 0.0011 P8 GC+1d culture TGCTGCATCA 1.1 0.0011 P8 GC+1d culture TGGCCCTGGT (5) 1.1 0.0011 P8 GC+SHH+1d culture TTGGGCCAGA (3) 39.8 0.0398 P8 GC+SHH+1d culture GCCTCTGGTG (11) 26.9 0.0269 P8 GC+SHH+1d culture CATCGCCAGT (3) 14.1 0.0141 P8 GC+SHH+1d culture CTGGGCCCAG (8) 11.7 0.0117 P8 GC+SHH+1d culture GAAGGAACAA (5) 5.9 0.0059 P8 GC+SHH+1d culture AGCTCCCAAG (2) 2.3 0.0023 P8 GC+SHH+1d culture CTGGGCAGAC (3) 2.3 0.0023 P8 GC+SHH+1d culture GGAGGGAGGG (4) 2.3 0.0023 P8 GC+SHH+1d culture CTGGCAGAGC (3) 1.2 0.0012 P8 GC+SHH+1d culture GAAGGAAGTG (5) 1.2 0.0012 P8 GC+SHH+1d culture GAGGAGGGTG (5) 1.2 0.0012 P8 GC+SHH+1d culture GAGGAGGTGC (4) 1.2 0.0012 P8 GC+SHH+1d culture TAACACAAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture TGCTCACGCA 1.2 0.0012 3T3 fibroblasts TTGGGCCAGA (3) 157.7 0.1577 3T3 fibroblasts GCCTCTGGTG (11) 31.5 0.0315 3T3 fibroblasts CTGGCAGAGC (3) 7 0.007 3T3 fibroblasts CTGGGCCCAG (8) 7 0.007 3T3 fibroblasts GGCCGCGACA (2) 7 0.007 3T3 fibroblasts CTTGGGCAGA (2) 3.5 0.0035 3T3 fibroblasts GAAGGAACAA (5) 3.5 0.0035 3T3 fibroblasts GAGGAAGTGC (4) 3.5 0.0035 3T3 fibroblasts GAGGAGGGTG (5) 3.5 0.0035 3T3 fibroblasts GCCAGAGCAC (7) 3.5 0.0035 E15 cortex TTGGGCCAGA (3) 74.2 0.0742 E15 cortex GAGGAGGGTG (5) 39.6 0.0396 E15 cortex GGCCGCGACA (2) 9.9 0.0099 E15 cortex AGCTCCCAAG (2) 4.9 0.0049 E15 cortex CATCGCCAGT (3) 4.9 0.0049 E15 cortex CTGGGCCAGA (9) 4.9 0.0049 E15 cortex TAACACAAAA (2) 4.9 0.0049 P1 cortex TTGGGCCAGA (3) 95.5 0.0955 P1 cortex CATCGCCAGT (3) 18.2 0.0182 P1 cortex CTGGGCCCAG (8) 13.6 0.0136 P1 cortex GAAGGAACAA (5) 9.1 0.0091 P1 cortex CATCGCCAGG 4.5 0.0045 P1 cortex GCCTCTGGTG (11) 4.5 0.0045 P1 cortex TGGCCCTGGT (5) 4.5 0.0045 Hypothalamus CATCGCCAGT (3) 72.4 0.0724 Hypothalamus TTGGGCCAGA (3) 27.2 0.0272 Hypothalamus CTGGGCCCAG (8) 25.4 0.0254 Hypothalamus GCCTCTGGTG (11) 16.3 0.0163 Hypothalamus GAAGGAACAA (5) 14.5 0.0145 Hypothalamus GAGGAGGTGC (4) 12.7 0.0127 Hypothalamus TCGGCTCCGA 10.9 0.0109 Hypothalamus TGCTCACGCA 9.1 0.0091 Hypothalamus GAGGAGGGTG (5) 7.2 0.0072 Hypothalamus CTGGGCCAGA (9) 5.4 0.0054 Hypothalamus TCTTCCACTA 5.4 0.0054 Hypothalamus ACCCAGCAAA (4) 1.8 0.0018 Hypothalamus AGCTCCCAAG (2) 1.8 0.0018 Hypothalamus CTGGGCCAAA (3) 1.8 0.0018 Hypothalamus GAAGGAAGTG (5) 1.8 0.0018 Hypothalamus GAGGAGGTGG (13) 1.8 0.0018 Hypothalamus GGCACTCTCA 1.8 0.0018 Hypothalamus TGGCCCTGGT (5) 1.8 0.0018 E12.5 retina GCCTCTGGTG (11) 56.3 0.0563 E12.5 retina GAAGGAACAA (5) 22.5 0.0225 E12.5 retina TTGGGCCAGA (3) 22.5 0.0225 E12.5 retina CATCGCCAGT (3) 5.6 0.0056 E12.5 retina CATCGCCAGG 3.8 0.0038 E12.5 retina GAGGAGGGTG (5) 3.8 0.0038 E12.5 retina GGCACTCTCA 3.8 0.0038 E12.5 retina AGGAAGGGGG (9) 1.9 0.0019 E12.5 retina CTGGGCCCAG (8) 1.9 0.0019 E12.5 retina GAAATGTGCC (5) 1.9 0.0019 E12.5 retina GAGGAGGGGA (12) 1.9 0.0019 E12.5 retina GGGAGGGGGC (4) 1.9 0.0019 E12.5 retina TCGGCTCCGA 1.9 0.0019 E12.5 retina TGCTCACGCA 1.9 0.0019 E12.5 retina TGGCCCTGGT (5) 1.9 0.0019 E14.5 retina GCCTCTGGTG (11) 23.7 0.0237 E14.5 retina GAAGGAACAA (5) 14.6 0.0146 E14.5 retina CTGGGCCCAG (8) 7.3 0.0073 E14.5 retina GAGGAGGGTG (5) 7.3 0.0073 E14.5 retina CATCGCCAGT (3) 1.8 0.0018 E14.5 retina GAGGAGGTGG (13) 1.8 0.0018 E14.5 retina GGGAGATGCT (3) 1.8 0.0018 E14.5 retina GGGGAGGGGC (5) 1.8 0.0018 E14.5 retina TAACACAAAA (2) 1.8 0.0018 E16.5 retina GCCTCTGGTG (11) 39.8 0.0398 E16.5 retina GAAGGAACAA (5) 16.3 0.0163 E16.5 retina CATCGCCAGT (3) 5.4 0.0054 E16.5 retina GAGGAGGGTG (5) 5.4 0.0054 E16.5 retina CTGGGCCCAG (8) 3.6 0.0036 E16.5 retina TTGGGCCAGA (3) 3.6 0.0036 E16.5 retina AGCTCCCAAG (2) 1.8 0.0018 E16.5 retina CCTGGGCCAG (5) 1.8 0.0018 E16.5 retina CTAGGCGCTG (3) 1.8 0.0018 E16.5 retina CTGGCAGAGC (3) 1.8 0.0018 E16.5 retina GAGGAAGTGC (4) 1.8 0.0018 E16.5 retina GAGGAGGTGG (13) 1.8 0.0018 E16.5 retina TCGGCTCCGA 1.8 0.0018 E16.5 retina TGCTCACGCA 1.8 0.0018 E16.5 retina TGCTGCATCA 1.8 0.0018 E18.5 retina GCCTCTGGTG (11) 52.8 0.0528 E18.5 retina TTGGGCCAGA (3) 20 0.02 E18.5 retina GAAGGAACAA (5) 14.6 0.0146 E18.5 retina CTGGGCCAGG (7) 3.6 0.0036 E18.5 retina CTGGGCCCAG (8) 3.6 0.0036 E18.5 retina AGGAAGGGGG (9) 1.8 0.0018 E18.5 retina CATCGCCAGT (3) 1.8 0.0018 E18.5 retina CTGGGCCAGA (9) 1.8 0.0018 E18.5 retina GAGGAAGTGC (4) 1.8 0.0018 E18.5 retina GAGGAGGGTG (5) 1.8 0.0018 P0.5 retina GCCTCTGGTG (11) 45.1 0.0451 P0.5 retina TTGGGCCAGA (3) 29.4 0.0294 P0.5 retina GAAGGAACAA (5) 15.7 0.0157 P0.5 retina CTGGGCCCAG (8) 7.9 0.0079 P0.5 retina GAGGAGGGTG (5) 7.9 0.0079 P0.5 retina CATCGCCAGT (3) 5.9 0.0059 P0.5 retina GAGGAAGTGC (4) 5.9 0.0059 P0.5 retina TGGCCTTTTT (4) 3.9 0.0039 P0.5 retina AGGGAAAGAT (3) 2 0.002 P0.5 retina CTGGGGAAGA (7) 2 0.002 P0.5 retina GGAGGGAGGG (4) 2 0.002 P0.5 retina GTGTGACATT (2) 2 0.002 P0.5 retina TGCTCACGCA 2 0.002 P2.5 retina GCCTCTGGTG (11) 45.8 0.0458 P2.5 retina TTGGGCCAGA (3) 28.2 0.0282 P2.5 retina CTGGGCCCAG (8) 15.8 0.0158 P2.5 retina GAAGGAACAA (5) 10.6 0.0106 P2.5 retina CATCGCCAGT (3) 5.3 0.0053 P2.5 retina AGGAAGGGGG (9) 3.5 0.0035 P2.5 retina CCTGGGCCAG (5) 3.5 0.0035 P2.5 retina GCCAGAGCAC (7) 3.5 0.0035 P2.5 retina GGCACTCTCA 3.5 0.0035 P2.5 retina ACCCAGCAAA (4) 1.8 0.0018 P2.5 retina CTGGCAGAGC (3) 1.8 0.0018 P2.5 retina CTGGGCCAAA (3) 1.8 0.0018 P2.5 retina CTGGGCCAGG (7) 1.8 0.0018 P2.5 retina GAGGAGGGGA (12) 1.8 0.0018 P2.5 retina GAGGAGGGGC (6) 1.8 0.0018 P2.5 retina GAGGAGGTGC (4) 1.8 0.0018 P2.5 retina GCCGTCGTGT (2) 1.8 0.0018 P2.5 retina GGAGGGAGGG (4) 1.8 0.0018 P2.5 retina GGGAGGGGGC (4) 1.8 0.0018 P2.5 retina GGGGAGGGGC (5) 1.8 0.0018 P2.5 retina GTGTGACATT (2) 1.8 0.0018 P2.5 retina TGCTCACGCA 1.8 0.0018 P4.5 retina GCCTCTGGTG (11) 31.7 0.0317 P4.5 retina CATCGCCAGT (3) 27.7 0.0277 P4.5 retina TTGGGCCAGA (3) 21.8 0.0218 P4.5 retina CTGGGCCCAG (8) 11.9 0.0119 P4.5 retina GAAGGAACAA (5) 11.9 0.0119 P4.5 retina AGGAAGGGGG (9) 2 0.002 P4.5 retina CTAGGCGCTG (3) 2 0.002 P4.5 retina GAAATGTGCC (5) 2 0.002 P4.5 retina GCCGTCGTGT (2) 2 0.002 P4.5 retina GGAGGGAGGG (4) 2 0.002 P4.5 retina GGGAGATGCT (3) 2 0.002 P4.5 retina GGGAGGGGGC (4) 2 0.002 P4.5 retina TATCGCCAGT 2 0.002 P4.5 retina TGCTGCATCA 2 0.002 P6.5 retina TTGGGCCAGA (3) 41.7 0.0417 P6.5 retina CATCGCCAGT (3) 33.3 0.0333 P6.5 retina GCCTCTGGTG (11) 26.7 0.0267 P6.5 retina GAAGGAACAA (5) 18.3 0.0183 P6.5 retina CTGGGCCCAG (8) 11.7 0.0117 P6.5 retina GGCACTCTCA 3.3 0.0033 P6.5 retina TCGGCTCCGA 3.3 0.0033 P6.5 retina TGCTCACGCA 3.3 0.0033 P6.5 retina ACCCAGCAAA (4) 1.7 0.0017 P6.5 retina CCTGGGCCAG (5) 1.7 0.0017 P6.5 retina CTGGCAGAGC (3) 1.7 0.0017 P6.5 retina CTGGGCCAAA (3) 1.7 0.0017 P6.5 retina CTGGGCCAGA (9) 1.7 0.0017 P6.5 retina GAAATGTGCC (5) 1.7 0.0017 P6.5 retina GAGGAAGTGC (4) 1.7 0.0017 P6.5 retina GAGGAGGGGC (6) 1.7 0.0017 P6.5 retina GCCAGAGCAC (7) 1.7 0.0017 P6.5 retina GGAGGGAGGG (4) 1.7 0.0017 P6.5 retina GGGAGATGCT (3) 1.7 0.0017 P10.5 crx- retina CATCGCCAGT (3) 59.4 0.0594 P10.5 crx- retina GAAGGAACAA (5) 33.4 0.0334 P10.5 crx- retina TTGGGCCAGA (3) 31.6 0.0316 P10.5 crx- retina GCCTCTGGTG (11) 18.6 0.0186 P10.5 crx- retina TGCTCACGCA 5.6 0.0056 P10.5 crx- retina CATCGCCAGG 3.7 0.0037 P10.5 crx- retina GAGGAGGGTG (5) 3.7 0.0037 P10.5 crx- retina GTGTGACATT (2) 3.7 0.0037 P10.5 crx- retina ACCCAGCAAA (4) 1.9 0.0019 P10.5 crx- retina AGGAAGGGGG (9) 1.9 0.0019 P10.5 crx- retina AGGGAAAGAT (3) 1.9 0.0019 P10.5 crx- retina CCTGGGCAGA (7) 1.9 0.0019 P10.5 crx- retina CCTGGGCCAG (5) 1.9 0.0019 P10.5 crx- retina CTGGCAGAGC (3) 1.9 0.0019 P10.5 crx- retina CTGGGCCAGA (9) 1.9 0.0019 P10.5 crx- retina CTGGGCCCAG (8) 1.9 0.0019 P10.5 crx- retina GAAATGTGCC (5) 1.9 0.0019 P10.5 crx- retina GAAGGAAGTG (5) 1.9 0.0019 P10.5 crx- retina GGAGGGAGGG (4) 1.9 0.0019 P10.5 crx- retina TCGGCTCCGA 1.9 0.0019 P10.5 crx+ retina TTGGGCCAGA (3) 46.1 0.0461 P10.5 crx+ retina CATCGCCAGT (3) 30.8 0.0308 P10.5 crx+ retina GCCTCTGGTG (11) 30.8 0.0308 P10.5 crx+ retina CTGGGCCCAG (8) 23.1 0.0231 P10.5 crx+ retina GAAGGAACAA (5) 19.2 0.0192 P10.5 crx+ retina CCTGGGCCAG (5) 5.8 0.0058 P10.5 crx+ retina GGGGAGGGGC (5) 3.8 0.0038 P10.5 crx+ retina AGGAAGGGGG (9) 1.9 0.0019 P10.5 crx+ retina CTGGCAGAGC (3) 1.9 0.0019 P10.5 crx+ retina CTTGGGCAGA (2) 1.9 0.0019 P10.5 crx+ retina GAAATGTGCC (5) 1.9 0.0019 P10.5 crx+ retina GAGGAGGGGC (6) 1.9 0.0019 P10.5 crx+ retina GCCAGAGCAC (7) 1.9 0.0019 P10.5 crx+ retina GCCGTCGTGT (2) 1.9 0.0019 P10.5 crx+ retina GGGAGATGCT (3) 1.9 0.0019 P10.5 crx+ retina TGGCCTTTTT (4) 1.9 0.0019 Adult retinal CATCGCCAGT (3) 42.6 0.0426 Adult retinal TTGGGCCAGA (3) 31.5 0.0315 Adult retinal GCCTCTGGTG (11) 24.1 0.0241 Adult retinal CTGGGCCCAG (8) 13 0.013 Adult retinal ATGAACACTG (30) 11.1 0.0111 Adult retinal CTGGCAGAGC (3) 5.6 0.0056 Adult retinal GAAGGAACAA (5) 5.6 0.0056 Adult retinal TCGGCTCCGA 5.6 0.0056 Adult retinal ACATTCAACT 3.7 0.0037 Adult retinal CTGGGGAAGA (7) 3.7 0.0037 Adult retinal GGCACTCTCA 3.7 0.0037 Adult retinal AGCTCCCAAG (2) 1.9 0.0019 Adult retinal CATCGCCAGG 1.9 0.0019 Adult retinal CCTGGGCAGA (7) 1.9 0.0019 Adult retinal CTGGGCCAGG (7) 1.9 0.0019 Adult retinal GAGGAGGGTG (5) 1.9 0.0019 Adult retinal GAGGAGGTGC (4) 1.9 0.0019 Adult retinal GAGGAGGTGG (13) 1.9 0.0019 Adult retinal TGCTCACGCA 1.9 0.0019 ONL TTGGGCCAGA (3) 21.1 0.0211 ONL ATGAACACTG (30) 13.4 0.0134 ONL GCCTCTGGTG (11) 13.4 0.0134 ONL CATCGCCAGT (3) 5.7 0.0057 ONL GGAGGGAGGG (4) 3.8 0.0038 ONL GGGAGGGGGC (4) 3.8 0.0038 ONL ACATTCAACT 1.9 0.0019 ONL CTGGGCCAGA (9) 1.9 0.0019 ONL CTTGGGCAGA (2) 1.9 0.0019 ONL GAAATGTGCC (5) 1.9 0.0019 ONL GAAGGAAGTG (5) 1.9 0.0019 ONL GGCACTCTCA 1.9 0.0019 ONL GTGTGACATT (2) 1.9 0.0019