Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.240627	Sox4	SRY-box containing gene 4	13	13 A3-A5 (13 20.0 cM)	20677
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	SOX4[SRY (sex determining region Y)-box 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 128 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAGGCACGA ATTTTTTTTC (2) CCATAGGACT GGGACCTCGT TCCCTGGGCA 32.7 0.0327 Cb medulloblastoma ACAGGCACGA ATTTTTTTTC (2) 11.5 0.0115 P8 GC+1d culture ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC CCATAGGACT GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 26.1 0.0261 P8 GC+SHH+1d culture ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC CCATAGGACT GGGACCTCGT TCCATTTCCG (2) TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 29.2 0.0292 3T3 fibroblasts ACAGGCACGA CCAATGCTCC GGGACCTCGT GTCATAGCTG (2) TCCCTGGGCA TTATCCTGTC (2) 70 0.07 E15 cortex ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC GAGAAACTCC (2) GGGACCTCGT GTCATAGCTG (2) TCCCTGGGCA TTTACACTTC 242.3 0.2423 P1 cortex ACAGGCACGA ATTTTTTTTC (2) CCATAGGACT GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) 109.1 0.1091 Hypothalamus ATTTTTTTTC (2) 1.8 0.0018 E12.5 retina ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC GGGACCTCGT GTGATAGCAT TCCCTGGGCA TTTACACTTC 28.3 0.0283 E14.5 retina ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC GAGAAACTCC (2) GGGACCTCGT GTGATAGCAT TCCATTTCCG (2) TCCCTGGGCA TTATCCTGTC (2) 32.6 0.0326 E16.5 retina ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC CCATAGGACT GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) 70.6 0.0706 E18.5 retina ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC CCATAGGACT GGGACCTCGT GTCAAGAAAG GTGATAGCAT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 52.6 0.0526 P0.5 retina ACAGGCACGA ATTTTTTTTC (2) CCATAGGACT GGGACCTCGT GTCATAGCTG (2) GTGATAGCAT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 68.8 0.0688 P2.5 retina ACAGGCACGA ATTTTTTTTC (2) CCATAGGACT GGGACCTCGT GTCATAGCTG (2) GTGATAGCAT TCCCTGGGCA TTTACACTTC 63.4 0.0634 P4.5 retina ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC CCATAGGACT GAGAAACTCC (2) GGGACCTCGT GTCAAGAAAG GTCATAGCTG (2) GTGATAGCAT TCCCTGGGCA 63.5 0.0635 P6.5 retina ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC CCATAGGACT GGGACCTCGT GTCATAGCTG (2) GTGATAGCAT TCCATTTCCG (2) TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 56.6 0.0566 P10.5 crx- retina ACAGGCACGA GGGACCTCGT 14.8 0.0148 P10.5 crx+ retina ACAGGCACGA ATTTTTTTTC (2) CCAATGCTCC GGGACCTCGT GTGATAGCAT 15.2 0.0152 Adult retinal ATTTTTTTTC (2) GTCATAGCTG (2) 3.8 0.0038 ONL ATTTTTTTTC (2) GGGACCTCGT GTCATAGCTG (2) 9.5 0.0095