Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4541	Sox2	SRY-box containing gene 2	3	3 A3 (3 15.0 cM)	20674
Gene Ontology	cell fate specification | cytoplasm | DNA binding | nucleus | nucleus | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	SOX2[SRY (sex determining region Y)-box 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 17 In Situ Hybridization Images

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SAGE Tags

Total 76 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) TATATATTTG TGAATACACA (2) 17.9 0.0179 Cb medulloblastoma GCCCAGCCTT GTCTGTGGCA (2) 30 0.03 P8 GC+1d culture CTGGAACCCA GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) TGAATACACA (2) 20.4 0.0204 P8 GC+SHH+1d culture GCCCAGCCTT GTCTGTGGCA (2) TGAATACACA (2) 18.7 0.0187 3T3 fibroblasts CCTTTAGTCT (2) GCCCAGCCTT 38.5 0.0385 E15 cortex CCTTTAGTCT (2) GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) 34.5 0.0345 P1 cortex GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) 18.1 0.0181 Hypothalamus CCTTTAGTCT (2) GCCCAGCCTT GTCTGTGGCA (2) TATATATTTG 23.6 0.0236 E12.5 retina CTGGAACCCA GATTCTCGGC GCCCAGCCTT TATATATTTG TGAATACACA (2) 24.4 0.0244 E14.5 retina CCTTTAGTCT (2) GCCCAGCCTT GTCTGTGGCA (2) TATATATTTG TGAATACACA (2) 12.6 0.0126 E16.5 retina GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) TATATATTTG 25.3 0.0253 E18.5 retina GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) TATATATTTG 23.7 0.0237 P0.5 retina CCTTTAGTCT (2) CTGGAACCCA GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) TATATATTTG TGAGGGCTGG (2) 49.1 0.0491 P2.5 retina GATTCTCGGC GCCCAGCCTT GTCTGTGGCA (2) TATATATTTG 21.2 0.0212 P4.5 retina GCCCAGCCTT GTCTGTGGCA (2) TGAGGGCTGG (2) 15.9 0.0159 P6.5 retina GCCCAGCCTT GTCTGTGGCA (2) TATAGATCTG (4) TGAATACACA (2) 25 0.025 P10.5 crx- retina CTGGAACCCA GCCCAGCCTT GTCTGTGGCA (2) TATAGATCTG (4) 20.6 0.0206 P10.5 crx+ retina GCCCAGCCTT GTCTGTGGCA (2) 25 0.025 Adult retinal GCCCAGCCTT GTCTGTGGCA (2) TGAATACACA (2) TGAGGGCTGG (2) 27.9 0.0279 ONL CCTTTAGTCT (2) GCCCAGCCTT 3.8 0.0038