Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.231395	Ctsd	cathepsin D	7	4 50.0 cM	13033
Gene Ontology	aspartic-type endopeptidase activity | cathepsin D activity | hydrolase activity | lysosome | mitochondrion | pepsin A activity | peptidase activity | proteolysis and peptidolysis
Human Homolog	CTSD[cathepsin D (lysosomal aspartyl protease)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTCAGCCTG (2) CCTTTCCAGG (4) GGAATGGACA (3) 30.9 0.0309 Cb medulloblastoma AAGACTCCCG CCTCAGCCTG (2) TTCTGTTCTG 32.3 0.0323 P8 GC+1d culture CAGCTCATCG CCTCAGCCTG (2) GGAATGGACA (3) GGTCCCCACA 38.7 0.0387 P8 GC+SHH+1d culture CAGCTCATCG CCTCAGCCTG (2) CCTTCCCAGG CCTTTCCAGG (4) 36.3 0.0363 3T3 fibroblasts CCTCAGCCTG (2) 143.7 0.1437 E15 cortex CCTCAGCCTG (2) 34.6 0.0346 P1 cortex CCTCAGCCTG (2) 13.6 0.0136 Hypothalamus AAGACTCCCG CAGCTCATCG CCTCAGCCTG (2) GGAATGGACA (3) TTCTGTTCTG 21.7 0.0217 E12.5 retina CCTCAGCCTG (2) CCTTCCCAGG 20.7 0.0207 E14.5 retina CCTCAGCCTG (2) CCTTCCAGGA (2) CCTTCCCAGG GGTCCCCACA 10.8 0.0108 E16.5 retina CCTCAGCCTG (2) CCTTCCAGGA (2) CCTTCCCAGG CCTTTCCAGG (4) GCTCAGCCCT GGTCCCCACA 18.1 0.0181 E18.5 retina CCTCAGCCTG (2) 14.6 0.0146 P0.5 retina CCTCAGCCTG (2) 5.9 0.0059 P2.5 retina CAGCTCATCG CCTCAGCCTG (2) CCTTTCCAGG (4) GCTCAGCCCT 19.5 0.0195 P4.5 retina CAGCTCATCG CCTCAGCCTG (2) GCTCAGCCCT 15.9 0.0159 P6.5 retina CCTCAGCCTG (2) CCTTTCCAGG (4) GGTCCCCACA 31.7 0.0317 P10.5 crx- retina CCTCAGCCTG (2) CCTTCCCAGG 40.9 0.0409 P10.5 crx+ retina CCTCAGCCTG (2) CCTTCCAGGA (2) 28.8 0.0288 Adult retinal CCTCAGCCTG (2) CCTTCCAGGA (2) TTCTGTTCTG 24.2 0.0242 ONL CCTCAGCCTG (2) GGAATGGACA (3) 13.4 0.0134