Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.273379
Snx5
sorting nexin 5
2
2 80.0 cM
69178
Gene Ontology
intracellular signaling cascade
|
protein transport
|
transport
Human Homolog
SNX5[sorting nexin 5]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 34 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGAATAAATA
TTACCAAAAA
6.6
0.0066
Cb medulloblastoma
TGTGTTTGTG
(
2
)
TTACCAAAAA
4.6
0.0046
P8 GC+1d culture
TGAATAAATA
TGTGTTTGTG
(
2
)
TTACCATATG
9.1
0.0091
P8 GC+SHH+1d culture
TGAATAAATA
TGTGTTTGTG
(
2
)
TTACCAAAAA
5.8
0.0058
P1 cortex
TGTGTTTGTG
(
2
)
9.1
0.0091
Hypothalamus
AAGTCTTTCT
(
3
)
TGAATAAATA
TTACCAAAAA
5.4
0.0054
E12.5 retina
AAGTCTTTCT
(
3
)
TGTGTTTGTG
(
2
)
3.8
0.0038
E16.5 retina
TGTGTTTGTG
(
2
)
3.6
0.0036
E18.5 retina
AAGTCTTTCT
(
3
)
TGAATAAATA
TTACCAAAAA
9.1
0.0091
P0.5 retina
TGAATAAATA
TGTGTTTGTG
(
2
)
9.9
0.0099
P2.5 retina
TGAATAAATA
TGTGTTTGTG
(
2
)
7
0.007
P4.5 retina
TGAATAAATA
4
0.004
P6.5 retina
TGAATAAATA
TGTGTTTGTG
(
2
)
13.3
0.0133
P10.5 crx- retina
TGTGTTTGTG
(
2
)
TTACCATATG
5.6
0.0056
P10.5 crx+ retina
TGTGTTTGTG
(
2
)
5.8
0.0058
Adult retinal
TGTGTTTGTG
(
2
)
1.9
0.0019
ONL
AAGTCTTTCT
(
3
)
TGTGTTTGTG
(
2
)
TTACCAAAAA
5.7
0.0057
