Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30039	Prkar1a	protein kinase, cAMP dependent regulatory, type I, alpha	11	11 65.0 cM	19084
Gene Ontology	3',5'-cAMP binding | cAMP-dependent protein kinase complex | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cell proliferation | cytoplasm | kinase activity | mesoderm formation | organogenesis | protein amino acid phosphorylation | protein binding | signal transduction | transferase activity
Human Homolog	PRKAR1A[protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 210 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTTTTTCTTT (5) 9.8 0.0098 P8 Cb GC CTAGCTTACA 6.5 0.0065 P8 Cb GC CTTCACTCAC (3) 6.5 0.0065 P8 Cb GC GGATAGAAAG (5) 6.5 0.0065 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC GACTGGGGAG (3) 3.3 0.0033 P8 Cb GC GGGAGCACTC 3.3 0.0033 P8 Cb GC AAAACGCAGT (2) 1.6 0.0016 P8 Cb GC AAAGAACACA (2) 1.6 0.0016 P8 Cb GC CCCACTGAAT (3) 1.6 0.0016 P8 Cb GC GCCACAGTCT (2) 1.6 0.0016 P8 Cb GC TGGTTGCCGG (6) 1.6 0.0016 P8 Cb GC TGTGCTTGTC (3) 1.6 0.0016 P8 Cb GC TTTTGCTAAT (2) 1.6 0.0016 Cb medulloblastoma GGGTTGGGGA (6) 18.5 0.0185 Cb medulloblastoma GGATAGAAAG (5) 9.2 0.0092 Cb medulloblastoma GGGAGCACTC 6.9 0.0069 Cb medulloblastoma CTTTTTCTTT (5) 4.6 0.0046 Cb medulloblastoma AAAGAACACA (2) 2.3 0.0023 Cb medulloblastoma CCCACTGAAT (3) 2.3 0.0023 Cb medulloblastoma CTAAAACCTA 2.3 0.0023 Cb medulloblastoma CTAGCTTACA 2.3 0.0023 Cb medulloblastoma TGGTTGCCGG (6) 2.3 0.0023 Cb medulloblastoma TGTGTGCAAG (8) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture CTTTTTCTTT (5) 20.5 0.0205 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture CTAGCTTACA 8 0.008 P8 GC+1d culture GAGATGGCCT (4) 4.6 0.0046 P8 GC+1d culture GGATAGAAAG (5) 4.6 0.0046 P8 GC+1d culture GGGAGCACTC 4.6 0.0046 P8 GC+1d culture CTTCACTCAC (3) 3.4 0.0034 P8 GC+1d culture CTAAAACCTA 2.3 0.0023 P8 GC+1d culture TGTGTGCAAG (8) 2.3 0.0023 P8 GC+1d culture AAAGAACACA (2) 1.1 0.0011 P8 GC+1d culture AAATGCATTT 1.1 0.0011 P8 GC+1d culture GGATGGTTAA (2) 1.1 0.0011 P8 GC+1d culture TGGTTGCCGG (6) 1.1 0.0011 P8 GC+1d culture TGTGCTTGTC (3) 1.1 0.0011 P8 GC+1d culture TTTTGCTAAT (2) 1.1 0.0011 P8 GC+SHH+1d culture CTTTTTCTTT (5) 10.5 0.0105 P8 GC+SHH+1d culture CTAGCTTACA 9.4 0.0094 P8 GC+SHH+1d culture TGTGCTTGTC (3) 8.2 0.0082 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture CTTCACTCAC (3) 4.7 0.0047 P8 GC+SHH+1d culture GAGATGGCCT (4) 4.7 0.0047 P8 GC+SHH+1d culture GGGAGCACTC 3.5 0.0035 P8 GC+SHH+1d culture TTTTGCTAAT (2) 3.5 0.0035 P8 GC+SHH+1d culture GGATAGAAAG (5) 2.3 0.0023 P8 GC+SHH+1d culture TGTGTGCAAG (8) 2.3 0.0023 P8 GC+SHH+1d culture CTAAAACCTA 1.2 0.0012 P8 GC+SHH+1d culture GGATGGTTAA (2) 1.2 0.0012 3T3 fibroblasts CTTCACTCAC (3) 17.5 0.0175 3T3 fibroblasts CTAGCTTACA 10.5 0.0105 3T3 fibroblasts CTTTTTCTTT (5) 3.5 0.0035 E15 cortex TGGTTGCCGG (6) 14.8 0.0148 E15 cortex GGATAGAAAG (5) 9.9 0.0099 E15 cortex AAATGCATTT 4.9 0.0049 E15 cortex CTAGCTTACA 4.9 0.0049 E15 cortex GAGATGGCCT (4) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex CTAGCTTACA 9.1 0.0091 P1 cortex CTAAAACCTA 4.5 0.0045 P1 cortex TGGTTGCCGG (6) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GGGTTGGGGA (6) 202.9 0.2029 Hypothalamus GGATAGAAAG (5) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TGGTTGCCGG (6) 5.4 0.0054 Hypothalamus CTAGCTTACA 3.6 0.0036 Hypothalamus CTTCACTCAC (3) 3.6 0.0036 Hypothalamus GGGAGCACTC 3.6 0.0036 Hypothalamus AAAGAACACA (2) 1.8 0.0018 Hypothalamus AAATGCATTT 1.8 0.0018 Hypothalamus CTTTTTCTTT (5) 1.8 0.0018 Hypothalamus GCCACAGTCT (2) 1.8 0.0018 Hypothalamus TGTGTGCAAG (8) 1.8 0.0018 Hypothalamus TTTTGCTAAT (2) 1.8 0.0018 E12.5 retina CTTTTTCTTT (5) 9.4 0.0094 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GGGAGCACTC 5.6 0.0056 E12.5 retina CTTCACTCAC (3) 3.8 0.0038 E12.5 retina GGATAGAAAG (5) 3.8 0.0038 E12.5 retina GGATGGTTAA (2) 3.8 0.0038 E12.5 retina AAAACGCAGT (2) 1.9 0.0019 E12.5 retina CCCACTGAAT (3) 1.9 0.0019 E12.5 retina CTAAAACCTA 1.9 0.0019 E12.5 retina TGGTTGCCGG (6) 1.9 0.0019 E12.5 retina TGTGCTTGTC (3) 1.9 0.0019 E12.5 retina TGTGTGCAAG (8) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina CTTTTTCTTT (5) 7.3 0.0073 E14.5 retina TGGTTGCCGG (6) 3.6 0.0036 E14.5 retina CTTCACTCAC (3) 1.8 0.0018 E14.5 retina GACTGGGGAG (3) 1.8 0.0018 E14.5 retina GCATTCCTTC 1.8 0.0018 E14.5 retina GGAAGCACTC (4) 1.8 0.0018 E14.5 retina GGGTTGGGGA (6) 1.8 0.0018 E14.5 retina TACATACACA (3) 1.8 0.0018 E16.5 retina CTTTTTCTTT (5) 14.5 0.0145 E16.5 retina TGGTTGCCGG (6) 7.2 0.0072 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina CTTCACTCAC (3) 1.8 0.0018 E16.5 retina GAGATGGCCT (4) 1.8 0.0018 E16.5 retina GGGAAGCAAT 1.8 0.0018 E16.5 retina GGGTTGGGGA (6) 1.8 0.0018 E18.5 retina GGGTTGGGGA (6) 23.6 0.0236 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina CTTTTTCTTT (5) 7.3 0.0073 E18.5 retina GTCAAGAAAG (4) 3.6 0.0036 E18.5 retina AAAACGCAGT (2) 1.8 0.0018 E18.5 retina AAAGAACACA (2) 1.8 0.0018 E18.5 retina AAATGCATTT 1.8 0.0018 E18.5 retina GGATAGAAAG (5) 1.8 0.0018 E18.5 retina GGGAGCACTC 1.8 0.0018 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina CTAGCTTACA 5.9 0.0059 P0.5 retina CTAAAACCTA 3.9 0.0039 P0.5 retina CTTCACTCAC (3) 3.9 0.0039 P0.5 retina CTTTTTCTTT (5) 3.9 0.0039 P0.5 retina GCCACAGTCT (2) 3.9 0.0039 P0.5 retina GGATAGAAAG (5) 3.9 0.0039 P0.5 retina TGTGTGCAAG (8) 3.9 0.0039 P2.5 retina CTTTTTCTTT (5) 17.6 0.0176 P2.5 retina CTAGCTTACA 7 0.007 P2.5 retina GGGTTGGGGA (6) 7 0.007 P2.5 retina TGTGTGCAAG (8) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GAGATGGCCT (4) 5.3 0.0053 P2.5 retina GGATAGAAAG (5) 3.5 0.0035 P2.5 retina GGGAAGCAAT 3.5 0.0035 P2.5 retina TGGTTGCCGG (6) 3.5 0.0035 P2.5 retina TGTGCTTGTC (3) 3.5 0.0035 P2.5 retina AAAGAACACA (2) 1.8 0.0018 P2.5 retina AAATGCATTT 1.8 0.0018 P2.5 retina CCAGTGCAGG (5) 1.8 0.0018 P2.5 retina CTTCACTCAC (3) 1.8 0.0018 P2.5 retina GGATGGTTAA (2) 1.8 0.0018 P2.5 retina GGGAGCACTC 1.8 0.0018 P2.5 retina TACATACACA (3) 1.8 0.0018 P2.5 retina TTTTGCTAAT (2) 1.8 0.0018 P4.5 retina CTTTTTCTTT (5) 13.9 0.0139 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CTAAAACCTA 4 0.004 P4.5 retina GGGAGCACTC 4 0.004 P4.5 retina AAAGAACACA (2) 2 0.002 P4.5 retina AAATGCATTT 2 0.002 P4.5 retina CCAGTGCAGG (5) 2 0.002 P4.5 retina CTAGCTTACA 2 0.002 P4.5 retina GGGTTGGGGA (6) 2 0.002 P4.5 retina GTCAAGAAAG (4) 2 0.002 P4.5 retina GTGCAAGGAG (3) 2 0.002 P4.5 retina TTTTGCTAAT (2) 2 0.002 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GGATAGAAAG (5) 6.7 0.0067 P6.5 retina CTAAAACCTA 5 0.005 P6.5 retina CTAGCTTACA 3.3 0.0033 P6.5 retina GGGAAGCAAT 3.3 0.0033 P6.5 retina AAAACGCAGT (2) 1.7 0.0017 P6.5 retina CCAGTGCAGG (5) 1.7 0.0017 P6.5 retina CTTCACTCAC (3) 1.7 0.0017 P6.5 retina CTTTTTCTTT (5) 1.7 0.0017 P6.5 retina GGGAGCACTC 1.7 0.0017 P6.5 retina GGGTTGGGGA (6) 1.7 0.0017 P6.5 retina TACATACACA (3) 1.7 0.0017 P6.5 retina TGTGCTTGTC (3) 1.7 0.0017 P6.5 retina TGTGTGCAAG (8) 1.7 0.0017 P10.5 crx- retina CTTCACTCAC (3) 11.1 0.0111 P10.5 crx- retina CTTTTTCTTT (5) 9.3 0.0093 P10.5 crx- retina CTAGCTTACA 3.7 0.0037 P10.5 crx- retina TGGTTGCCGG (6) 3.7 0.0037 P10.5 crx- retina AAAACGCAGT (2) 1.9 0.0019 P10.5 crx- retina AAAGAACACA (2) 1.9 0.0019 P10.5 crx- retina CCAGTGCAGG (5) 1.9 0.0019 P10.5 crx- retina GAGATGGCCT (4) 1.9 0.0019 P10.5 crx- retina GGAAGCACTC (4) 1.9 0.0019 P10.5 crx- retina GGATAGAAAG (5) 1.9 0.0019 P10.5 crx+ retina CTTCACTCAC (3) 5.8 0.0058 P10.5 crx+ retina AAAACGCAGT (2) 3.8 0.0038 P10.5 crx+ retina CTTTTTCTTT (5) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina CTAAAACCTA 1.9 0.0019 P10.5 crx+ retina GGATAGAAAG (5) 1.9 0.0019 P10.5 crx+ retina GGATGGTTAA (2) 1.9 0.0019 P10.5 crx+ retina GGGAAGCAAT 1.9 0.0019 P10.5 crx+ retina GGGAGCACTC 1.9 0.0019 P10.5 crx+ retina GTGCAAGGAG (3) 1.9 0.0019 P10.5 crx+ retina TGGTTGCCGG (6) 1.9 0.0019 P10.5 crx+ retina TGTGTGCAAG (8) 1.9 0.0019 Adult retinal CTAGCTTACA 14.8 0.0148 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GAGATGGCCT (4) 5.6 0.0056 Adult retinal CTTTTTCTTT (5) 3.7 0.0037 Adult retinal AAATGCATTT 1.9 0.0019 Adult retinal CTAAAACCTA 1.9 0.0019 Adult retinal CTTCACTCAC (3) 1.9 0.0019 Adult retinal GACTGGGGAG (3) 1.9 0.0019 Adult retinal GGGAGCACTC 1.9 0.0019 Adult retinal GGGTTGGGGA (6) 1.9 0.0019 Adult retinal GTGCAAGGAG (3) 1.9 0.0019 Adult retinal TACATACACA (3) 1.9 0.0019 Adult retinal TTTTGCTAAT (2) 1.9 0.0019 ONL GGGTTGGGGA (6) 32.6 0.0326 ONL CTTTTTCTTT (5) 3.8 0.0038 ONL TGTGTGCAAG (8) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL AAAGAACACA (2) 1.9 0.0019 ONL CTTCACTCAC (3) 1.9 0.0019 ONL GGATAGAAAG (5) 1.9 0.0019 ONL GGGAAGCAAT 1.9 0.0019