Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30039	Prkar1a	protein kinase, cAMP dependent regulatory, type I, alpha	11	11 65.0 cM	19084
Gene Ontology	3',5'-cAMP binding | cAMP-dependent protein kinase complex | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cell proliferation | cytoplasm | kinase activity | mesoderm formation | organogenesis | protein amino acid phosphorylation | protein binding | signal transduction | transferase activity
Human Homolog	PRKAR1A[protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 114 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTAGCTTACA 6.5 0.0065 P8 Cb GC CTTCACTCAC 6.5 0.0065 P8 Cb GC GGATAGAAAG (2) 6.5 0.0065 P8 Cb GC GACTGGGGAG (2) 3.3 0.0033 P8 Cb GC GGGAGCACTC 3.3 0.0033 P8 Cb GC AAAACGCAGT 1.6 0.0016 P8 Cb GC GCCACAGTCT 1.6 0.0016 P8 Cb GC TTTTGCTAAT (2) 1.6 0.0016 Cb medulloblastoma GGATAGAAAG (2) 9.2 0.0092 Cb medulloblastoma GGGAGCACTC 6.9 0.0069 Cb medulloblastoma CTAAAACCTA 2.3 0.0023 Cb medulloblastoma CTAGCTTACA 2.3 0.0023 Cb medulloblastoma TGTGTGCAAG (3) 2.3 0.0023 P8 GC+1d culture CTAGCTTACA 8 0.008 P8 GC+1d culture GGATAGAAAG (2) 4.6 0.0046 P8 GC+1d culture GGGAGCACTC 4.6 0.0046 P8 GC+1d culture CTTCACTCAC 3.4 0.0034 P8 GC+1d culture CTAAAACCTA 2.3 0.0023 P8 GC+1d culture TGTGTGCAAG (3) 2.3 0.0023 P8 GC+1d culture AAATGCATTT 1.1 0.0011 P8 GC+1d culture GGATGGTTAA (2) 1.1 0.0011 P8 GC+1d culture TTTTGCTAAT (2) 1.1 0.0011 P8 GC+SHH+1d culture CTAGCTTACA 9.4 0.0094 P8 GC+SHH+1d culture CTTCACTCAC 4.7 0.0047 P8 GC+SHH+1d culture GGGAGCACTC 3.5 0.0035 P8 GC+SHH+1d culture TTTTGCTAAT (2) 3.5 0.0035 P8 GC+SHH+1d culture GGATAGAAAG (2) 2.3 0.0023 P8 GC+SHH+1d culture TGTGTGCAAG (3) 2.3 0.0023 P8 GC+SHH+1d culture CTAAAACCTA 1.2 0.0012 P8 GC+SHH+1d culture GGATGGTTAA (2) 1.2 0.0012 3T3 fibroblasts CTTCACTCAC 17.5 0.0175 3T3 fibroblasts CTAGCTTACA 10.5 0.0105 E15 cortex GGATAGAAAG (2) 9.9 0.0099 E15 cortex AAATGCATTT 4.9 0.0049 E15 cortex CTAGCTTACA 4.9 0.0049 P1 cortex CTAGCTTACA 9.1 0.0091 P1 cortex CTAAAACCTA 4.5 0.0045 Hypothalamus GGATAGAAAG (2) 7.2 0.0072 Hypothalamus CTAGCTTACA 3.6 0.0036 Hypothalamus CTTCACTCAC 3.6 0.0036 Hypothalamus GGGAGCACTC 3.6 0.0036 Hypothalamus AAATGCATTT 1.8 0.0018 Hypothalamus GCCACAGTCT 1.8 0.0018 Hypothalamus TGTGTGCAAG (3) 1.8 0.0018 Hypothalamus TTTTGCTAAT (2) 1.8 0.0018 E12.5 retina GGGAGCACTC 5.6 0.0056 E12.5 retina CTTCACTCAC 3.8 0.0038 E12.5 retina GGATAGAAAG (2) 3.8 0.0038 E12.5 retina GGATGGTTAA (2) 3.8 0.0038 E12.5 retina AAAACGCAGT 1.9 0.0019 E12.5 retina CTAAAACCTA 1.9 0.0019 E12.5 retina TGTGTGCAAG (3) 1.9 0.0019 E14.5 retina CTTCACTCAC 1.8 0.0018 E14.5 retina GACTGGGGAG (2) 1.8 0.0018 E14.5 retina GCATTCCTTC 1.8 0.0018 E14.5 retina GGAAGCACTC 1.8 0.0018 E16.5 retina CTTCACTCAC 1.8 0.0018 E16.5 retina GGGAAGCAAT 1.8 0.0018 E18.5 retina AAAACGCAGT 1.8 0.0018 E18.5 retina AAATGCATTT 1.8 0.0018 E18.5 retina GGATAGAAAG (2) 1.8 0.0018 E18.5 retina GGGAGCACTC 1.8 0.0018 P0.5 retina CTAGCTTACA 5.9 0.0059 P0.5 retina CTAAAACCTA 3.9 0.0039 P0.5 retina CTTCACTCAC 3.9 0.0039 P0.5 retina GCCACAGTCT 3.9 0.0039 P0.5 retina GGATAGAAAG (2) 3.9 0.0039 P0.5 retina TGTGTGCAAG (3) 3.9 0.0039 P2.5 retina CTAGCTTACA 7 0.007 P2.5 retina TGTGTGCAAG (3) 7 0.007 P2.5 retina GGATAGAAAG (2) 3.5 0.0035 P2.5 retina GGGAAGCAAT 3.5 0.0035 P2.5 retina AAATGCATTT 1.8 0.0018 P2.5 retina CTTCACTCAC 1.8 0.0018 P2.5 retina GGATGGTTAA (2) 1.8 0.0018 P2.5 retina GGGAGCACTC 1.8 0.0018 P2.5 retina TTTTGCTAAT (2) 1.8 0.0018 P4.5 retina CTAAAACCTA 4 0.004 P4.5 retina GGGAGCACTC 4 0.004 P4.5 retina AAATGCATTT 2 0.002 P4.5 retina CTAGCTTACA 2 0.002 P4.5 retina TTTTGCTAAT (2) 2 0.002 P6.5 retina GGATAGAAAG (2) 6.7 0.0067 P6.5 retina CTAAAACCTA 5 0.005 P6.5 retina CTAGCTTACA 3.3 0.0033 P6.5 retina GGGAAGCAAT 3.3 0.0033 P6.5 retina AAAACGCAGT 1.7 0.0017 P6.5 retina CTTCACTCAC 1.7 0.0017 P6.5 retina GGGAGCACTC 1.7 0.0017 P6.5 retina TGTGTGCAAG (3) 1.7 0.0017 P10.5 crx- retina CTTCACTCAC 11.1 0.0111 P10.5 crx- retina CTAGCTTACA 3.7 0.0037 P10.5 crx- retina AAAACGCAGT 1.9 0.0019 P10.5 crx- retina GGAAGCACTC 1.9 0.0019 P10.5 crx- retina GGATAGAAAG (2) 1.9 0.0019 P10.5 crx+ retina CTTCACTCAC 5.8 0.0058 P10.5 crx+ retina AAAACGCAGT 3.8 0.0038 P10.5 crx+ retina CTAAAACCTA 1.9 0.0019 P10.5 crx+ retina GGATAGAAAG (2) 1.9 0.0019 P10.5 crx+ retina GGATGGTTAA (2) 1.9 0.0019 P10.5 crx+ retina GGGAAGCAAT 1.9 0.0019 P10.5 crx+ retina GGGAGCACTC 1.9 0.0019 P10.5 crx+ retina TGTGTGCAAG (3) 1.9 0.0019 Adult retinal CTAGCTTACA 14.8 0.0148 Adult retinal AAATGCATTT 1.9 0.0019 Adult retinal CTAAAACCTA 1.9 0.0019 Adult retinal CTTCACTCAC 1.9 0.0019 Adult retinal GACTGGGGAG (2) 1.9 0.0019 Adult retinal GGGAGCACTC 1.9 0.0019 Adult retinal TTTTGCTAAT (2) 1.9 0.0019 ONL TGTGTGCAAG (3) 3.8 0.0038 ONL CTTCACTCAC 1.9 0.0019 ONL GGATAGAAAG (2) 1.9 0.0019 ONL GGGAAGCAAT 1.9 0.0019