Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30039	Prkar1a	protein kinase, cAMP dependent regulatory, type I, alpha	11	11 65.0 cM	19084
Gene Ontology	3',5'-cAMP binding | cAMP-dependent protein kinase complex | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cell proliferation | cytoplasm | kinase activity | mesoderm formation | organogenesis | protein amino acid phosphorylation | protein binding | signal transduction | transferase activity
Human Homolog	PRKAR1A[protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 210 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAACGCAGT AAAGAACACA CCCACTGAAT (2) CTAGCTTACA CTTCACTCAC CTTTTTCTTT GACTGGGGAG (2) GCCACAGTCT GGATAGAAAG (2) GGGAGCACTC TGGTTGCCGG (2) TGTGCTTGTC (2) TTTTGCTAAT (2) TTTTTTTTTT (2) 52 0.052 Cb medulloblastoma AAAGAACACA CCCACTGAAT (2) CTAAAACCTA CTAGCTTACA CTTTTTCTTT GGATAGAAAG (2) GGGAGCACTC GGGTTGGGGA (2) TGGTTGCCGG (2) TGTGTGCAAG (3) TTTTTTTTTT (2) 55.3 0.0553 P8 GC+1d culture AAAGAACACA AAATGCATTT CTAAAACCTA CTAGCTTACA CTTCACTCAC CTTTTTCTTT GAGATGGCCT (3) GGATAGAAAG (2) GGATGGTTAA (2) GGGAGCACTC TGGTTGCCGG (2) TGTGCTTGTC (2) TGTGTGCAAG (3) TTTTGCTAAT (2) TTTTTTTTTT (2) 70.6 0.0706 P8 GC+SHH+1d culture CTAAAACCTA CTAGCTTACA CTTCACTCAC CTTTTTCTTT GAGATGGCCT (3) GGATAGAAAG (2) GGATGGTTAA (2) GGGAGCACTC TGTGCTTGTC (2) TGTGTGCAAG (3) TTTTGCTAAT (2) TTTTTTTTTT (2) 57.4 0.0574 3T3 fibroblasts CTAGCTTACA CTTCACTCAC CTTTTTCTTT 31.5 0.0315 E15 cortex AAATGCATTT CTAGCTTACA GAGATGGCCT (3) GGATAGAAAG (2) TGGTTGCCGG (2) TTTTTTTTTT (2) 44.3 0.0443 P1 cortex CTAAAACCTA CTAGCTTACA TGGTTGCCGG (2) TTTTTTTTTT (2) 22.6 0.0226 Hypothalamus AAAGAACACA AAATGCATTT CTAGCTTACA CTTCACTCAC CTTTTTCTTT GCCACAGTCT GGATAGAAAG (2) GGGAGCACTC GGGTTGGGGA (2) TGGTTGCCGG (2) TGTGTGCAAG (3) TTTTGCTAAT (2) TTTTTTTTTT (2) 244.3 0.2443 E12.5 retina AAAACGCAGT CCCACTGAAT (2) CTAAAACCTA CTTCACTCAC CTTTTTCTTT GGATAGAAAG (2) GGATGGTTAA (2) GGGAGCACTC TGGTTGCCGG (2) TGTGCTTGTC (2) TGTGTGCAAG (3) TTTTTTTTTT (2) 45.3 0.0453 E14.5 retina CTTCACTCAC CTTTTTCTTT GACTGGGGAG (2) GCATTCCTTC GGAAGCACTC GGGTTGGGGA (2) TACATACACA TGGTTGCCGG (2) TTTTTTTTTT (2) 45.4 0.0454 E16.5 retina CTTCACTCAC CTTTTTCTTT GAGATGGCCT (3) GGGAAGCAAT GGGTTGGGGA (2) TGGTTGCCGG (2) TTTTTTTTTT (2) 34.3 0.0343 E18.5 retina AAAACGCAGT AAAGAACACA AAATGCATTT CTTTTTCTTT GGATAGAAAG (2) GGGAGCACTC GGGTTGGGGA (2) GTCAAGAAAG TTTTTTTTTT (2) 54.4 0.0544 P0.5 retina CTAAAACCTA CTAGCTTACA CTTCACTCAC CTTTTTCTTT GCCACAGTCT GGATAGAAAG (2) TGTGTGCAAG (3) TTTTTTTTTT (2) 39.1 0.0391 P2.5 retina AAAGAACACA AAATGCATTT CCAGTGCAGG (2) CTAGCTTACA CTTCACTCAC CTTTTTCTTT GAGATGGCCT (3) GGATAGAAAG (2) GGATGGTTAA (2) GGGAAGCAAT GGGAGCACTC GGGTTGGGGA (2) TACATACACA TGGTTGCCGG (2) TGTGCTTGTC (2) TGTGTGCAAG (3) TTTTGCTAAT (2) TTTTTTTTTT (2) 79.3 0.0793 P4.5 retina AAAGAACACA AAATGCATTT CCAGTGCAGG (2) CTAAAACCTA CTAGCTTACA CTTTTTCTTT GGGAGCACTC GGGTTGGGGA (2) GTCAAGAAAG GTGCAAGGAG TTTTGCTAAT (2) TTTTTTTTTT (2) 47.8 0.0478 P6.5 retina AAAACGCAGT CCAGTGCAGG (2) CTAAAACCTA CTAGCTTACA CTTCACTCAC CTTTTTCTTT GGATAGAAAG (2) GGGAAGCAAT GGGAGCACTC GGGTTGGGGA (2) TACATACACA TGTGCTTGTC (2) TGTGTGCAAG (3) TTTTTTTTTT (2) 41.9 0.0419 P10.5 crx- retina AAAACGCAGT AAAGAACACA CCAGTGCAGG (2) CTAGCTTACA CTTCACTCAC CTTTTTCTTT GAGATGGCCT (3) GGAAGCACTC GGATAGAAAG (2) TGGTTGCCGG (2) 39.2 0.0392 P10.5 crx+ retina AAAACGCAGT CTAAAACCTA CTTCACTCAC CTTTTTCTTT GGATAGAAAG (2) GGATGGTTAA (2) GGGAAGCAAT GGGAGCACTC GTGCAAGGAG TGGTTGCCGG (2) TGTGTGCAAG (3) TTTTTTTTTT (2) 32.4 0.0324 Adult retinal AAATGCATTT CTAAAACCTA CTAGCTTACA CTTCACTCAC CTTTTTCTTT GACTGGGGAG (2) GAGATGGCCT (3) GGGAGCACTC GGGTTGGGGA (2) GTGCAAGGAG TACATACACA TTTTGCTAAT (2) TTTTTTTTTT (2) 48.6 0.0486 ONL AAAGAACACA CTTCACTCAC CTTTTTCTTT GGATAGAAAG (2) GGGAAGCAAT GGGTTGGGGA (2) TGTGTGCAAG (3) TTTTTTTTTT (2) 51.6 0.0516