Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30039	Prkar1a	protein kinase, cAMP dependent regulatory, type I, alpha	11	11 65.0 cM	19084
Gene Ontology	3',5'-cAMP binding | cAMP-dependent protein kinase complex | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cAMP-dependent protein kinase regulator activity | cell proliferation | cytoplasm | kinase activity | mesoderm formation | organogenesis | protein amino acid phosphorylation | protein binding | signal transduction | transferase activity
Human Homolog	PRKAR1A[protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 114 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAACGCAGT CTAGCTTACA CTTCACTCAC GACTGGGGAG (2) GCCACAGTCT GGATAGAAAG (2) GGGAGCACTC TTTTGCTAAT (2) 30.9 0.0309 Cb medulloblastoma CTAAAACCTA CTAGCTTACA GGATAGAAAG (2) GGGAGCACTC TGTGTGCAAG (3) 23 0.023 P8 GC+1d culture AAATGCATTT CTAAAACCTA CTAGCTTACA CTTCACTCAC GGATAGAAAG (2) GGATGGTTAA (2) GGGAGCACTC TGTGTGCAAG (3) TTTTGCTAAT (2) 28.5 0.0285 P8 GC+SHH+1d culture CTAAAACCTA CTAGCTTACA CTTCACTCAC GGATAGAAAG (2) GGATGGTTAA (2) GGGAGCACTC TGTGTGCAAG (3) TTTTGCTAAT (2) 28.1 0.0281 3T3 fibroblasts CTAGCTTACA CTTCACTCAC 28 0.028 E15 cortex AAATGCATTT CTAGCTTACA GGATAGAAAG (2) 19.7 0.0197 P1 cortex CTAAAACCTA CTAGCTTACA 13.6 0.0136 Hypothalamus AAATGCATTT CTAGCTTACA CTTCACTCAC GCCACAGTCT GGATAGAAAG (2) GGGAGCACTC TGTGTGCAAG (3) TTTTGCTAAT (2) 25.2 0.0252 E12.5 retina AAAACGCAGT CTAAAACCTA CTTCACTCAC GGATAGAAAG (2) GGATGGTTAA (2) GGGAGCACTC TGTGTGCAAG (3) 22.7 0.0227 E14.5 retina CTTCACTCAC GACTGGGGAG (2) GCATTCCTTC GGAAGCACTC 7.2 0.0072 E16.5 retina CTTCACTCAC GGGAAGCAAT 3.6 0.0036 E18.5 retina AAAACGCAGT AAATGCATTT GGATAGAAAG (2) GGGAGCACTC 7.2 0.0072 P0.5 retina CTAAAACCTA CTAGCTTACA CTTCACTCAC GCCACAGTCT GGATAGAAAG (2) TGTGTGCAAG (3) 25.4 0.0254 P2.5 retina AAATGCATTT CTAGCTTACA CTTCACTCAC GGATAGAAAG (2) GGATGGTTAA (2) GGGAAGCAAT GGGAGCACTC TGTGTGCAAG (3) TTTTGCTAAT (2) 30 0.03 P4.5 retina AAATGCATTT CTAAAACCTA CTAGCTTACA GGGAGCACTC TTTTGCTAAT (2) 14 0.014 P6.5 retina AAAACGCAGT CTAAAACCTA CTAGCTTACA CTTCACTCAC GGATAGAAAG (2) GGGAAGCAAT GGGAGCACTC TGTGTGCAAG (3) 25.1 0.0251 P10.5 crx- retina AAAACGCAGT CTAGCTTACA CTTCACTCAC GGAAGCACTC GGATAGAAAG (2) 20.5 0.0205 P10.5 crx+ retina AAAACGCAGT CTAAAACCTA CTTCACTCAC GGATAGAAAG (2) GGATGGTTAA (2) GGGAAGCAAT GGGAGCACTC TGTGTGCAAG (3) 21 0.021 Adult retinal AAATGCATTT CTAAAACCTA CTAGCTTACA CTTCACTCAC GACTGGGGAG (2) GGGAGCACTC TTTTGCTAAT (2) 26.2 0.0262 ONL CTTCACTCAC GGATAGAAAG (2) GGGAAGCAAT TGTGTGCAAG (3) 9.5 0.0095